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Gene name - Trehalose-sensitivity/Gr5a Synonyms - Cytological map position - 5A11-B1 Function - transmembrane receptor Keywords - taste receptors, G-protein coupled receptor |
Symbol - Tre FlyBase ID: FBgn0003747 Genetic map position - 1-13.6 Classification - G-protein coupled receptor Cellular location - transmembrane |
Taste receptors are likely to belong to the superfamily of G protein-coupled receptors (GPCRs). In Drosophila, taste sensilla are present on the labellum, tarsi, and wing margins. In a typical chemosensillum on the labellum, there are four taste sensory cells, each of which responds to either water, salt, or sugar. The Trehalose-sensitivity (Tre) gene was identified through studies on natural variants (Tanimura, 1982). The Tre gene has been cytologically mapped to the region between 5A10 and 5B1-3 on the X chromosome (Tanimura, 1988). Because the Tre gene controls taste sensitivity to trehalose without affecting the responses to other sugars, the gene product of Tre should function in sugar receptor cells. Disruption of the Tre gene lowers the taste sensitivity to trehalose, whereas sensitivities to other sugars are unaltered. Overexpression of the Tre gene restores the taste sensitivity to trehalose in the Tre deletion mutant. The Tre gene has been shown to be expressed in taste sensory cells. These results provide direct evidence that Tre encodes a putative taste receptor for trehalose in Drosophila (Ishimoto, 2000). An independent study has identified a family of taste receptors in Drosophila that is unrelated to the Trehalose-sensitivity gene described here (Clyne, 2000).
This review is divided into two halves. The first describes the identification of CG3171 as Tre by Ishimoto (2000). This identification has been called into question by Ueno (2001). Ueno's identification of Tre as the gene adjacent to CG3171, the gustatory receptor Gr5a, is presented in the second half of this essay (see below).
To identify the putative Tre gene, a differential screen was performed for genes cloned into P1 vectors that might be specifically expressed in chemosensory cells. Advantage was taken of the pox-neuro (poxn) gene, which is involved in the developmental decision pathway between mechanosensory and chemosensory cell fates. In an adult-viable allele of the poxn mutant, all external chemosensilla are either transformed into mechanosensilla or are deleted. In the legs of the wild-type fly, chemosensilla exist on the tarsus, but there are no chemosensilla on the femur. A differential screening was carried out with cDNA probes derived from labella, tarsi, and femurs of wild-type and poxn mutant flies. The purpose of this screen was to distinguish genes expressed in wild-type but not expressed in poxn mutants (Ishimoto, 2000).
Southern blot analysis of the subcloned P1 DNA fragments identified one clone that hybridized to the wild-type labella and tarsi probes, but not to the other probes. A portion of the 8.2-kb clone displayed conserved features of the superfamily of seven-transmembrane domain receptor proteins. The full-length putative Tre1 cDNA was obtained by reverse transcriptase-dependent polymerase chain reaction (RT-PCR) and 5' and 3' rapid amplification of cDNA ends (Ishimoto, 2000).
By searching the Drosophila DNA database with the 5'-flanking genomic sequences of the putative Tre gene, flanking genomic sequences of the P-element were found in one previously isolated transposon-inserted strain [EP(X)] that completely matched the genomic sequence of Tre. The EP element is inserted 113 bp upstream of the transcription initiation site in the EP(X)0496 strain. The taste sensitivity of this strain to trehalose was tested with the two-choice preference test and the strain was found to highly sensitive, suggesting that the P-element insertion leaves the gene function intact (Ishimoto, 2000).
One way to isolate a mutation is to screen for imprecise excision of a P-element inserted near the gene that one wants to disrupt. It was expected that imprecise excision of the P-element should disrupt the promoter region of the Tre gene, and this event might change sensitivity to trehalose. The EP element carries w+ as a genetic marker, and the element was jumped out by genetically supplying a transposase source. w male flies were tested by two-choice preference tests, using as choices 30 mM trehalose and 2 mM sucrose. At this concentration of trehalose, nearly 98% of the parental EP(X)0496 flies preferred trehalose. Most of the w flies preferred trehalose, indicating that the precise excision of the P-element does not impair trehalose sensitivity. Flies that consumed the sucrose side were selected and individually crossed to C(1)DX attached-X females. From about 3000 w flies, 90 lines were isolated that were confirmed as showing low sensitivity to trehalose. The extent of deletion was determined in all the 90 lines by PCR, using primers flanking the P-element insertion site. There were no amplification products in most of these lines, indicating that a deletion eliminated the primer site(s) (Ishimoto, 2000).
Next, several lines were selected, and the extent of deletion was determined by Southern blotting. The results indicate that the deletions removed the putative promoter region and the first exon. In fact, RT-PCR analyses indicate that the Tre mRNAs are undetectable in all these lines. The sequence surrounding the insertion site was determined and it was confirmed that the strain that showed high sensitivity to trehalose had undergone a precise excision event. Tre mRNA is normal in this line (Ishimoto, 2000).
The taste sensitivity to trehalose of two DeltaTre lines was tested by the two-choice preference test with different concentrations of trehalose. The sensitivity to trehalose can be defined as the PI50, the concentration of trehalose that gives a 50% preference index (PI). For Canton-S, a typical high-sensitive strain, PI50 is 10 mM. In the original EP(X)0496 flies, the PI50 value is 12 mM, whereas the value is 80 mM in the two DeltaTre lines. Taken together, the disruption of the Tre gene leads to a lowering of the taste sensitivity to trehalose. Results of the two-choice preference test cannot discern whether trehalose sensitivity alone is altered in the DeltaTre strains. The proboscis extension reflex was examined by using four different sugar solutions: glucose, fructose, sucrose, and trehalose. The results demonstrate that the response to trehalose is specifically reduced in the DeltaTre lines. Since sensitivity to other sugars is unaffected, the sensitivity difference to trehalose should be attributed to a defect in the trehalose receptor. This conclusion is supported by the observation that the nerve responses to trehalose in the labellar chemosensilla are reduced in the DeltaTre mutant, whereas the sucrose sensitivity is unaffected. This electrophysiological evidence indicates that Tre is directly involved in trehalose sensation (Ishimoto, 2000).
To further confirm that the Tre gene is directly involved in the taste response to trehalose, transgenic lines were established carrying the hs-Tre cDNA gene so that Tre gene expression could be induced by heat shock. The P[hs-Tre]#1 line shows the highest expression of Tre mRNA after heat shock. Heat shock was tested in the background of the DeltaTre deletion mutant and was found to restore the trehalose sensitivity of the DeltaTre deletion mutant (Ishimoto, 2000).
In summary, a putative taste receptor gene, Tre, has been identified in Drosophila and the product of the Tre gene likely functions as a taste receptor for trehalose. Three findings are noted: (1) disruption of the Tre gene lowers the trehalose sensitivity of sugar receptor cells while leaving sensitivity to other sugars intact; (2) overexpression of the Tre transgene restores the response to trehalose; (3) the Tre gene is specifically expressed in putative sugar receptor cells. Because the Tre gene identified in this study was isolated from the genomic clone where Tre was initially mapped mapped, it is thought that the mutation(s) of the Tre gene is involved in the natural variation. If it is assumed that Tre1 is the sole receptor for trehalose, the null mutant of Tre (DeltaTre) should show no response to trehalose. The DeltaTre flies still respond to higher concentrations of trehalose, and this response would be mediated by another unidentified receptor for trehalose, although the possibility cannot be excluded that deletion mutants are not null. In fact, two other genes in the Drosophila genome have been identified with similarity to Tre; it is thought that TRE1 belongs to a novel family of G protein-linked transmembrane receptors that may operate as taste receptors. The function of the cloned gene should be investigated using expression systems, as has been successfully applied in the studies of olfactory receptors (Ishimoto, 2000).
The identification of CG3171 as Tre by Ishimoto (2000) has been called into question by Ueno (2001). Ueno's identification of Tre as the gene adjacent to CG3171, the gustatory receptor Gr5a, is presented below. The argument is rather compelling, but the two sets of data are still in conflict because of Ishimoto's convincing overexpression data. Nevetheless, a confirmation of Ueno's result has been provided by Dahanukar (2001), who has also identified Gr5a as Tre. Dahanukar's results are given in the Effects of Mutation section.
Drosophila taste gene Tre is located on the distal X chromosome and controls gustatory sensitivity to a subset of sugars. Two adjacent, seven-transmembrane domain genes near the Tre locus are candidate genes for Tre. One (CG3171) encodes a rhodopsin family G protein receptor, and the other (Gr5a) is a member of a chemosensory gene family encoding a putative gustatory receptor. Molecular analyses of mutations in Tre were carried out in order to elucidate their involvement in the gustatory phenotype. Tre mutations induced by P element-mediated genomic deletions disrupt Gr5a gene organization and the expression of Gr5a mRNA, while disruption of the CG3171 gene or its expression is not always associated with mutations in Tre. In flies with the spontaneous mutation Tre01, both CG3171 and Gr5a mRNAs are transcribed. Coding sequences of these two candidate genes were compared among various strains. A total of three polymorphic sites leading to amino acid changes in CG3171 were not correlated with the gustatory phenotype. Among four nonsynonymous sites in Gr5a, a single nucleotide polymorphism leading to an Ala218Thr substitution in the predicted second intracellular loop cosegregated with Tre01. Taken together, the mutation analyses support that Gr5a is allelic to Tre (Ueno, 2001).
Flies carrying a spontaneous mutation Tre01 show a decreased gustatory sensitivity to trehalose. Two seven-transmembrane receptor genes Gr5a (Scott, 2001 and Dunipace, 2001) and CG3171 (Ishimoto, 2000) have been identified in the region where the Tre01 is mapped. A single P element insert [EP(X)496] (GenBank accession number AQ025347) that maps directly between the two genes was used to generate Tre mutations by activating imprecise P element excisions. A total of 22 independent Tre mutations were recovered. The gustatory phenotype has been assessed by a feeding preference test. Males of a wild-type Tre+ strain, w cx Tre+, produced the mean proportion of flies choosing the trehalose solution, or preference index (PI), of 0.90, while w cv Tre01 males carrying a spontaneous mutation Tre01 gave a low PI value of 0.30 (p < 0.01). EP(X)496 was wild-type for Tre, since the strain gave a PI value of 0.95. Males carrying the P excised Tre mutations TreDeltaEP3, TreDeltaEP5, or TreDeltaEP19 gave significantly low PIs of 0.06 or less (p < 0.01). Complementation tests between the P mutations and Tre01 confirm that the P mutations are allelic to Tre, but these P mutations of Tre apparently show a more severe phenotype than the spontaneous mutation Tre01 (p < 0.01) (Ueno, 2001).
Induced Tre mutations are genomic deletions uncovering CG3171 and/or Gr5a. The two Tre candidates CG3171 and Gr5a are adjacent genes on the genome facing the 5' end (GenBank accession number AE003435). The insertion of EP(X)496 is located between the two genes and is less than 0.1 kbp upstream of the transcription start site (GenBank accession number AB042625) of CG3171 and 0.7 kbp upstream of the putative start codon of Gr5a. TreDeltaEP3 (GenBank accession number AB066610) has a 2.1 kbp genomic deletion uncovering 0.7 kbp toward Gr5a and 1.4 kbp toward CG3171. In TreDeltaEP5 (GenBank accession number AB066611), a 2.5 kbp deletion was identified that spans 0.9 and 1.6 kbp in the directions of Gr5a and CG3171, respectively. The gene structure of CG3171 in TreDeltaEP3 and TreDeltaEP5 is disrupted by the absence of the promoter, exon 1, and part of intron 1. Gr5a gene is also disrupted in TreDeltaEP5 since it uncovers the promoter, the 5' leader, and 133 bp downstream of the start codon. Deletion in TreDeltaEP3 leaves 44 bp intact in the 5' leader, but at least 58 bp are truncated in addition to the deletion of the promoter. Therefore, TreDeltaEP3 and TreDeltaEP5 are expected to be double mutations of both CG3171 and Gr5a (Ueno, 2001).
TreDeltaEP19 (GenBank accession number AB066612) is distinct from TreDeltaEP3 or TreDeltaEP5 since the 3' end of the P element has been precisely excised out, leaving the CG3171 gene structure intact. TreDeltaEP19 uncovers a 1.0 kbp sequence in the direction of Gr5a that includes the promoter, the 5' leader, and a 253 bp sequence of the entire exon 1, intron 1, and part of exon 2. Therefore, only the Gr5a gene structure is specifically and most severely disrupted in TreDeltaEP19. Taking the genomic analyses together, disruption of Gr5a but not CG3171 is associated with Tre mutations (Ueno, 2001).
The transcripts of CG3171 and Gr5a were then investigated in the P excised mutants. RT-PCR with total RNAs isolated from the head amplified a CG3171 mRNA sequence in Tre+ and Tre01 flies. No amplification was observed with TreDeltaEP3 or TreDeltaEP5 templates. With TreDeltaEP1, TreDeltaEP13, and TreDeltaEP18 templates, the RT-PCR also failed to amplify the fragment. However, there was another class of mutations in which the expression of CG3171 mRNA was observed. TreDeltaEP7, TreDeltaEP11, TreDeltaEP12, TreDeltaEP14, and TreDeltaEP19 belong to this class. Among these, TreDeltaEP19 was predicted to express CG3171 from the intact genomic structure. In the Northern blot analysis, the antisense RNA probe of CG3171 labeled a 1.6 kbp mRNA from wild-type heads. The 1.6 kbp band was not detectable in TreDeltaEP3 or TreDeltaEP5, but was present in TreDeltaEP19, as in the RT-PCR analysis. CG3171 mRNA was further analyzed in various wild-type tissues (Ueno, 2001).
CG3171 mRNA is normally expressed in the labella, the head, and the appendages of a mutant poxn in which chemosensory neurons are transformed to mechanosensory neurons. The low tissue specificity of CG3171 is inconsistent with the claim of Ishimoto (2000) that CG3171 mRNA was identified from the differential screen of cDNA libraries between wild-type and poxn mutant tissues. A CG3171 cDNA clone LD12308 (GenBank accession number AA438512) was isolated from an embryonic library. CG3171 mRNA is expressed throughout embryonic and adult stages. A different line of evidence supporting CG3171 as a developmental gene was provided by Toba (1999) who showed that developmental phenotypes are induced in various tissues of the transformants carrying a misexpression construct inserted adjacent to CG3171 locus when the expression is activated by Gal4 drivers (Ueno, 2001).
Gr5a mRNA was examined in wild-type and mutant flies. RT-PCR was successful with poly(A)+ RNA prepared from 300 heads and 100 labella. An 856 bp Gr5a mRNA fragment was not identified in the deletions TreDeltaEP3, TreDeltaEP5, and TreDeltaEP19, while Gr5a mRNA is transcribed in wild-type, EP(X)496, and Tre01 heads. It is therefore suggested that intact mRNAs are not transcribed in those mutants. Gr5a mRNAs from wild-type and poxn labella were compared by the RT-PCR. Gr5a mRNA was identified in the wild-type labella, as observed in the heads. In the poxn labella, however, it was either absent or present in severely decreased amounts, suggesting that Gr5a is predominantly expressed in the gustatory sensory neurons in the labella. The expression analyses support that Gr5a is expressed in the gustatory neurons and that the mutation of Gr5a is associated with the Tre phenotype (Ueno, 2001).
Both CG3171 and Gr5a mRNAs were identified in the flies carrying the spontaneous mutation Tre01. The nucleotide polymorphisms leading to amino acid changes were investigated. A 1.5 kbp genomic sequence downstream of the start codon of CG3171 was analyzed in w cx Tre+, w cv Tre01, and four isofemale wild strains. The gustatory phenotype was also investigated for the wild strains. One strain (HG84) was Tre+, and the other three strains were Tre01. Sequence analysis has revealed a total of 12 single-nucleotide polymorphisms (SNPs) and an 18 bp insertion/deletion in exons. In addition, a total of 18 SNPs and two oligonucleotide insertions/deletions were also identified in the introns (GenBank accession numbers AB066613). The insertion of the 18 bp oligonucleotide ATGGATATGGATATGGGA, leading to an insertion of six amino acids in the N-terminal region, was identified in w cv Tre01 and two wild strains, HG84(Tre+) and Singapore (Tre01). In these three strains, a SNP in exon 2 leading to a Phe12Ile substitution was also identified. A second nonsynonymous SNP in exon 7 leading to a Leu348Met substitution was identified in all strains, except in w cx Tre+. None of the three sites, however, was linked to the gustatory dimorphism (Ueno, 2001).
Similarly, Gr5a polymorphisms were also analyzed for the 1.7 kbp genomic region in the following six strains: w cx Tre+, Canton-S (Tre+), HG84 (Tre+), w cv Tre01, Oregon-R (Tre01), and Singapore (Tre01). There were a total of 25 SNPs within the exons of the Gr5a gene. Nineteen SNPs and two single-nucleotide insertions/deletions were also found in the introns (GenBank accessions numbers AB066619-24). Among the exon polymorphisms, four nonsynonymous SNPs were identifed. The SNPs Met23Ile and Leu216His were identified only in Oregon-R (Tre01) and w cv Tre01, respectively. Val19Ile was identified in all three Tre01 strains but also in HG84 (Tre+). The only SNP that cosegregated with the Tre phenotype was Ala218Thr. Additional experiments have shown that Ala218Thr is significantly correlated with the gustatory Tre phenotype. The Ala218 is located in the predicted second intracellular loop domain of GR5a. Since the second or the third loop is known to be critically important in the activation of G protein both by rhodopsin and by mGluR1, GR5a may activate G protein through a similar mechanism, and the Ala218 may be involved in the activation process. Although functional characterization of Gr5a has yet to be performed, it is proposed that Gr5a encodes a gustatory sugar receptor controlled by the locus Tre (Ueno, 2001).
Sequence analysis reveals that the putative Tre1 gene, identified in the Ishimoto (2000) study as CG3171, contains a 1179-base pair (bp) open reading frame that encodes 392 amino acid residues preceded by an in-frame termination codon. Hydropathy analysis suggests that the Tre1 cDNA sequence contains seven hydrophobic stretches that represent potential transmembrane domains. These domains constitute the regions of maximal sequence similarity to other seven-transmembrane receptors. Although several conserved regions are found between Tre1 and other GPCRs, the structures of the third and fourth cytoplasmic domains may be unique, because they are longer than the corresponding domains of typical GPCRs. The Tre1 gene, as identified by Ishimoto, most closely resembles two other orphan receptors of Drosophila: EG:22E5.11 and EG:22E5.10 (Brody, 2000). It is suggested that the Tre gene may represent a new subclass of taste receptors (Ishimoto, 2000).
date revised: 20 November 2004
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