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Talbert, M. E., Barnett, B., Hoff, R., Amella, M., Kuczynski, K., Lavington, E., Koury, S., Brud, E. and Eanes, W. F. (2015). Genetic perturbation of key central metabolic genes extends lifespan in Drosophila and affects response to dietary restriction. Proc Biol Sci 282. PubMed ID: 26378219 Cogni, R., Kuczynski, K., Lavington, E., Koury, S., Behrman, E. L., O'Brien, K. R., Schmidt, P. S. and Eanes, W. F. (2015). Variation in Drosophila melanogaster central metabolic genes appears driven by natural selection both within and between populations. Proc Biol Sci 282: 20142688. PubMed ID: 25520361 Lavington, E., Cogni, R., Kuczynski, C., Koury, S., Behrman, E. L., O'Brien, K. R., Schmidt, P. S. and Eanes, W. F. (2014). A small system--high-resolution study of metabolic adaptation in the central metabolic pathway to temperate climates in Drosophila melanogaster. Mol Biol Evol 31: 2032-2041. PubMed ID: 24770333 Nellas, I., Iyer, K. V., Iglesias-Artola, J. M., Pippel, M., Nadler, A., Eaton, S. and Dye, N. A. (2022). Hedgehog signaling can enhance glycolytic ATP production in the Drosophila wing disc. EMBO Rep: e202154025. PubMed ID: 36134875 Ghosh, S., Leng, W., Wilsch-Brauninger, M., Barrera-Velazquez, M., Leopold, P. and Eaton, S. (2022). A local insulin reservoir in Drosophila alpha cell homologs ensures developmental progression under nutrient shortage. Curr Biol. PubMed ID: 35316653 Iyer, K. V., Taubenberger, A., Zeidan, S. A., Dye, N. A., Eaton, S. and Julicher, F. (2021). Apico-basal cell compression regulates Lamin A/C levels in epithelial tissues. Nat Commun 12(1): 1756. PubMed ID: 33767161 Dye, N. A., Popovic, M., Iyer, K. V., Fuhrmann, J., Piscitello-Gomez, R., Eaton, S. and Julicher, F. (2021). Self-organized patterning of cell morphology via mechanosensitive feedback. Elife 10. PubMed ID: 33769281 Iyer, K. V., Piscitello-Gomez, R., Paijmans, J., Julicher, F. and Eaton, S. (2019). Epithelial viscoelasticity is regulated by mechanosensitive E-cadherin turnover. Curr Biol. PubMed ID: 30744966 Brankatschk, M., Gutmann, T., Knittelfelder, O., Palladini, A., Prince, E., Grzybek, M., Brankatschk, B., Shevchenko, A., Coskun, U. and Eaton, S. (2018). A temperature-dependent switch in feeding preference improves Drosophila development and survival in the cold. Dev Cell 46(6): 781-793.e784. PubMed ID: 30253170 Azpurua, J., Mahoney, R. E. and Eaton, B. A. (2018). Transcriptomics of aged Drosophila motor neurons reveals a matrix metalloproteinase that impairs motor function. Aging Cell 17(2). PubMed ID: 29411505 Dye, N. A., Popovic, M., Spannl, S., Etournay, R., Kainmuller, D., Ghosh, S., Myers, E. W., Julicher, F. and Eaton, S. (2017). Cell dynamics underlying oriented growth of the Drosophila wing imaginal disc. Development 144(23): 4406-4421. PubMed ID: 29038308 Kreko-Pierce, T. and Eaton, B. A. (2017). The Drosophila LC8 homologue Cut-up specifies the axonal transport of proteasomes. J Cell Sci. PubMed ID: 28808087 Chen, J. V., Kao, L. R., Jana, S. C., Sivan-Loukianova, E., Mendonca, S., Cabrera, O. A., Singh, P., Cabernard, C., Eberl, D. F., Bettencourt-Dias, M. and Megraw, T. L. (2015). Rootletin organizes the ciliary rootlet to achieve neuron sensory function in Drosophila. J Cell Biol 211: 435-453. PubMed ID: 26483560 Kavlie, R. G., Fritz, J. L., Nies, F., Gopfert, M. C., Oliver, D., Albert, J. T. and Eberl, D. F. (2014). Prestin is an anion transporter dispensable for mechanical feedback amplification in Drosophila hearing. J Comp Physiol A Neuroethol Sens Neural Behav Physiol. PubMed ID: 25412730 Christie, K. W. and Eberl, D. F. (2014). Noise-induced hearing loss: new animal models. Curr Opin Otolaryngol Head Neck Surg. PubMed ID: 25111054 Boekhoff-Falk, G. and Eberl, D. F. (2014). The Drosophila auditory system. Wiley Interdiscip Rev Dev Biol 3: 179-191. PubMed ID: 24719289 Christie, K. W., Sivan-Loukianova, E., Smith, W. C., Aldrich, B. T., Schon, M. A., Roy, M., Lear, B. C. and Eberl, D. F. (2013). Physiological, anatomical, and behavioral changes after acoustic trauma in Drosophila melanogaster. Proc Natl Acad Sci U S A. PubMed ID: 24003166 Bharadwaj, R., Roy, M., Ohyama, T., Sivan-Loukianova, E., Delannoy, M., Lloyd, T. E., Zlatic, M., Eberl, D. F. and Kolodkin, A. L. (2013). Cbl-associated protein regulates assembly and function of two tension-sensing structures in Drosophila. Development 140: 627-638. PubMed ID: 23293294 Roy, M., Sivan-Loukianova, E. and Eberl, D. F. (2013). Cell-type-specific roles of Na+/K+ ATPase subunits in Drosophila auditory mechanosensation. Proc Natl Acad Sci U S A 110: 181-186. PubMed ID: 23248276 Kavlie, R. G., Kernan, M. J. and Eberl, D. F. (2010). Hearing in Drosophila requires TilB, a conserved protein associated with ciliary motility. Genetics 185: 177-188. PubMed ID: 20215474 Yang, Y. and Edery, I. (2018). Parallel clinal variation in the mid-day siesta of Drosophila melanogaster implicates continent-specific targets of natural selection. PLoS Genet 14(9): e1007612. PubMed ID: 30180162 Zhang, Z., Cao, W. and Edery, I. (2018). The SR protein B52/SRp55 regulates splicing of the period thermosensitive intron and mid-day siesta in Drosophila. Sci Rep 8(1): 1872. PubMed ID: 29382842 Cao, W. and Edery, I. (2017). Mid-day siesta in natural populations of D. melanogaster from Africa exhibits an altitudinal cline and is regulated by splicing of a thermosensitive intron in the period clock gene. BMC Evol Biol 17(1): 32. PubMed ID: 28114910 Yildirim, E., Chiu, J. C. and Edery, I. (2015). Identification of light-sensitive phosphorylation sites on PERIOD that regulate the pace of circadian rhythms in Drosophila. Mol Cell Biol. PubMed ID: 26711257 Kwok, R.S., Li, Y.H., Lei, A.J., Edery, I. and Chiu, J.C. (2015). The catalytic and non-catalytic functions of the Brahma chromatin-remodeling protein collaborate to fine-tune circadian transcription in Drosophila. PLoS Genet 11: e1005307. PubMed ID: 26132408 Cao, W. and Edery, I. (2014). A novel pathway for sensory-mediated arousal involves splicing of an intron in the clock gene. Sleep. PubMed ID: 25325457 Lee, E., Jeong, E. H., Jeong, H. J., Yildirim, E., Vanselow, J. T., Ng, F., Liu, Y., Mahesh, G., Kramer, A., Hardin, P. E., Edery, I. and Kim, E. Y. (2014). Phosphorylation of a central clock transcription factor is required for thermal but not photic entrainment. PLoS Genet 10: e1004545. PubMed ID: 25121504 Mahesh, G., Jeong, E., Ng, F. S., Liu, Y., Gunawardhana, K., Houl, J. H., Yildirim, E., Amunugama, R., Jones, R., Allen, D. L., Edery, I., Kim, E. Y. and Hardin, P. E. (2014). Phosphorylation of the Transcription Activator CLOCK Regulates Progression through a approximately 24-h Feedback Loop to Influence the Circadian Period in Drosophila. J Biol Chem 289: 19681-19693. PubMed ID: 24872414 Low, K. H., Chen, W. F., Yildirim, E. and Edery, I. (2012). Natural variation in the Drosophila melanogaster clock gene period modulates splicing of its 3'-terminal intron and mid-day siesta. PLoS One 7: e49536. PubMed ID: 23152918 Zhang, C., Jin, Y., Marchetti, M., Lewis, M. R., Hammouda, O. T. and Edgar, B. A. (2022). EGFR signaling activates intestinal stem cells by promoting mitochondrial biogenesis and β-oxidation. Curr Biol 32(17): 3704-3719.e3707. PubMed ID: 35896119 Ovrebø, J. I., Bradley-Gill, M. R., Zielke, N., Kim, M., Marchetti, M., Bohlen, J., Lewis, M., van Straaten, M., Moon, N. S. and Edgar, B. A. (2022). Translational control of E2f1 regulates the Drosophila cell cycle. Proc Natl Acad Sci U S A 119(4). PubMed ID: 35074910 Tauc, H. M., Rodriguez-Fernandez, I. A., Hackney, J. A., Pawlak, M., Ronnen Oron, T., Korzelius, J., Moussa, H. F., Chaudhuri, S., Modrusan, Z., Edgar, B. A. and Jasper, H. (2021). Age-related changes in polycomb gene regulation disrupt lineage fidelity in intestinal stem cells. Elife 10. PubMed ID: 33724181 Tamamouna, V., Rahman, M. M., Petersson, M., Charalambous, I., Kux, K., Mainor, H., Bolender, V., Isbilir, B., Edgar, B. A. and Pitsouli, C. (2021). Remodelling of oxygen-transporting tracheoles drives intestinal regeneration and tumorigenesis in Drosophila. Nat Cell Biol 23(5): 497-510. PubMed ID: 33972730 Zhang, P., Katzaroff, A. J., Buttitta, L. A., Ma, Y., Jiang, H., Nickerson, D. W., Ovrebo, J. I. and Edgar, B. A. (2021). The Kruppel-like factor Cabut has cell cycle regulatory properties similar to E2F1. Proc Natl Acad Sci U S A 118(7). PubMed ID: 33558234 Ahmed, S. M. H., Maldera, J. A., Krunic, D., Paiva-Silva, G. O., Penalva, C., Teleman, A. A. and Edgar, B. A. (2020). Fitness trade-offs incurred by ovary-to-gut steroid signalling in Drosophila. Nature. PubMed ID: 32641829 Kwon, Y. V., Zhao, B., Xu, C., Lee, J., Chen, C. L., Vinayagam, A., Edgar, B. A. and Perrimon, N. (2019). The role of translationally controlled tumor protein in proliferation of Drosophila intestinal stem cells. Proc Natl Acad Sci U S A. PubMed ID: 31843907 Patel, P. H., Penalva, C., Kardorff, M., Roca, M., Pavlovic, B., Thiel, A., Teleman, A. A. and Edgar, B. A. (2019). Damage sensing by a Nox-Ask1-MKK3-p38 signaling pathway mediates regeneration in the adult Drosophila midgut. Nat Commun 10(1): 4365. PubMed ID: 31554796 Zhang, P., Holowatyj, A. N., Ulrich, C. M. and Edgar, B. A. (2019). Tumor suppressive autophagy in intestinal stem cells controls gut homeostasis. Autophagy: 1-3. PubMed ID: 31213134 Garcia Del Arco, A., Edgar, B. A. and Erhardt, S. (2018). In vivo analysis of centromeric proteins reveals a stem cell-specific asymmetry and an essential role in differentiated, non-proliferating cells. Cell Rep 22(8): 1982-1993. PubMed ID: 29466727 Singari, S., Javeed, N., Tardi, N. J., Marada, S., Carlson, J. C., Kirk, S., Thorn, J. M. and Edwards, K. A. 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G. (2013). In vitro imaging of primary neural cell culture from Drosophila. Nat Protoc 8: 958-965. PubMed ID: 23598446 Eickbush, M. T. and Eickbush, T. H. (2011). Retrotransposition of R2 elements in somatic nuclei during the early development of Drosophila. Mob DNA 2: 11. PubMed ID: 21958913 Chandler, J. A., Innocent, L. V., Martinez, D. J., Huang, I. L., Yang, J. L., Eisen, M. B. and Ludington, W. B. (2022). Microbiome-by-ethanol interactions impact Drosophila melanogaster fitness, physiology, and behavior. iScience 25(4): 104000. PubMed ID: 35313693 Berrocal, A., Lammers, N. C., Garcia, H. G. and Eisen, M. B. (2020). Kinetic sculpting of the seven stripes of the Drosophila even-skipped gene. Elife 9. PubMed ID: 33300492 Bronski, M. J., Martinez, C. C., Weld, H. A. and Eisen, M. B. (2020). Whole genome Sequences of 23 Species from the Drosophila montium Species Group (Diptera: Drosophilidae): A Resource for Testing Evolutionary Hypotheses. G3 (Bethesda). PubMed ID: 32220952 Mir, M., Stadler, M. R., Ortiz, S. A., Hannon, C. E., Harrison, M. M., Darzacq, X. and Eisen, M. B. (2018). Dynamic multifactor hubs interact transiently with sites of active transcription in Drosophila embryos. Elife 7. PubMed ID: 30589412 Elya, C., Zhang, V., Ludington, W. B. and Eisen, M. B. (2016). Stable Host Gene Expression in the Gut of Adult Drosophila melanogaster with Different Bacterial Mono-Associations. PLoS One 11(11): e0167357. PubMed ID: 27898741 Elya, C., Lok, T. C., Spencer, Q. E., McCausland, H., Martinez, C. C. and Eisen, M. (2018). Robust manipulation of the behavior of Drosophila melanogaster by a fungal pathogen in the laboratory. Elife 7. PubMed ID: 30047862 Haines, J. E. and Eisen, M. B. (2018). Patterns of chromatin accessibility along the anterior-posterior axis in the early Drosophila embryo. PLoS Genet 14(5): e1007367. PubMed ID: 29727464 Stadler, M. R., Haines, J. E. and Eisen, M. (2017). Convergence of topological domain boundaries, insulators, and polytene interbands revealed by high-resolution mapping of chromatin contacts in the early Drosophila melanogaster embryo. Elife 6. PubMed ID: 29148971 Mir, M., Reimer, A., Haines, J. E., Li, X. Y., Stadler, M., Garcia, H., Eisen, M. B. and Darzacq, X. (2017). Dense Bicoid hubs accentuate binding along the morphogen gradient. Genes Dev 31(17): 1784-1794. PubMed ID: 28982761 Li, L., Anderson, S., Secombe, J. and Eisenman, R. N. (2013). The Drosophila ubiquitin-specific protease Puffyeye regulates dMyc-mediated growth. Development 140(23): 4776-4787. PubMed ID: 24173801 >Li, L., Greer, C., Eisenman, R. N. and Secombe, J. (2010). Essential functions of the histone demethylase lid. PLoS Genet 6(11): e1001221. PubMed ID: 21124823 Herz, H. M., Morgan, M., Gao, X., Jackson, J., Rickels, R., Swanson, S. K., Florens, L., Washburn, M. P., Eissenberg, J. C. and Shilatifard, A. (2014). 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PLoS One 7: e46025. PubMed ID: 23049926 Bhatnagar, A., Krick, K., Karisetty, B. C., Armour, E. M., Heller, E. A. and Elefant, F. (2023). Tip60's Novel RNA-Binding Function Modulates Alternative Splicing of Pre-mRNA Targets Implicated in Alzheimer's Disease. J Neurosci 43(13): 2398-2423. PubMed ID: 36849418 Beaver, M., Bhatnagar, A., Panikker, P., Zhang, H., Snook, R., Parmar, V., Vijayakumar, G., Betini, N., Akhter, S. and Elefant, F. (2020). Disruption of Tip60 HAT mediated neural histone acetylation homeostasis is an early common event in neurodegenerative diseases. Sci Rep 10(1): 18265. PubMed ID: 33106538 Zhang, H., Karisetty, B. C., Bhatnagar, A., Armour, E. M., Beaver, M., Roach, T. V., Mortazavi, S., Mandloi, S. and Elefant, F. (2020). Tip60 protects against amyloid-&betal-induced transcriptomic alterations via different modes of action in early versus late stages of neurodegeneration. Mol Cell Neurosci 109: 103570. PubMed ID: 33160016 Panikker, P., Xu, S. 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